find_long_gels
-io io_handle:integer
-contigs identifiers:strings
?-avg_len length:integer(500)?
This command searches for places where rerunning a reading as a long gel will
solve a problem. The function returns no value but will generate a Tcl error
if an error occurs.
-io
io_handle
-
The database IO handle returned from a previous
open_db
call.
-contigs
identifiers
-
This specifies the list of contigs to search. The {contig start end}
syntax may be used for an identifier to search only a region of the
contig, otherwise all of it is searched.
-avg_len
length
-
This specifies the length expected for a long reading. This is used to
determine which readings are suitable for rerunning and the amount of
coverage available. The default is 500 base pairs.
Last generated on 8 Febuary 2011.